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Pull requests list

WIP repeatmasker: bump and dfam data table
#6845 opened Mar 15, 2025 by bernt-matthias • Draft
3 of 6 tasks
[WIP] EMBOSS v6
#6687 opened Jan 22, 2025 by shiltemann Loading…
4 of 5 tasks
hicBuildMatrix: allow zero min repeats for bins so not compulsorily on the command line
#6457 opened Oct 15, 2024 by fubar2 Loading…
Linter fixes for gatk4
#6375 opened Sep 26, 2024 by bernt-matthias Loading…
5 tasks
[WIP] add alpha version of pangenie
#7380 opened Oct 23, 2025 by bgruening • Draft
New tool addition: Samestr2
#7304 opened Sep 25, 2025 by xens25 • Draft
5 tasks
Updating tools/mzmine to 4.7.8
#7171 opened Jul 24, 2025 by SaimMomin12 • Draft
3 of 5 tasks
add alevin-fry
#7149 opened Jul 17, 2025 by dannyspadaro • Draft
3 of 5 tasks
update metabuli to 1.1.0
#6996 opened May 19, 2025 by astrovsky01 Loading…
3 of 5 tasks
Updating minimap2 to latest version and adding a new preset option
#6937 opened Apr 25, 2025 by SaimMomin12 • Draft
3 of 5 tasks
The data_manager_wordcloud folder was updated
#6813 opened Mar 5, 2025 by reyhaneh-tavakoli Loading…
Isoform switch analyzer - Fix autoupdate
#5498 opened Sep 25, 2023 by elischberg Loading…
1 of 5 tasks
add linter skip rules for 24.2
#6590 opened Nov 25, 2024 by bernt-matthias • Draft
3 of 5 tasks
Fix virannot test
#6586 opened Nov 24, 2024 by bernt-matthias Loading…
3 of 5 tasks
emboss6 wip
#5724 opened Jan 19, 2024 by bernt-matthias • Draft
11 tasks
1
Added tests to fetch genome all fasta dbkeys data manager
#6083 opened Jun 14, 2024 by profgiuseppe Loading…
4 of 5 tasks
picard improvements (sort order)
#5103 opened Jan 27, 2023 by bernt-matthias • Draft
3 of 5 tasks
1
mothur: try to fix CI failures
#4759 opened Aug 29, 2022 by bernt-matthias Loading…
3 of 5 tasks
fix pysradb
#5223 opened Mar 29, 2023 by bernt-matthias Loading…
3 of 5 tasks
pycoqc fix bam input
#5201 opened Mar 21, 2023 by bernt-matthias • Draft
3 of 5 tasks
1
Updating tools/transdecoder from version 5.5.0 to 5.7.1
#5159 opened Feb 27, 2023 by planemo-autoupdate Loading…
some inconsistencies between mothods and method
#4409 opened Feb 15, 2022 by bgruening Loading…
Updating tools/breseq from version 0.35.5 to 0.38.1
#4112 opened Oct 25, 2021 by planemo-autoupdate Loading…
Check for potentially unused test data files and check file sizes only for changed files
#4077 opened Oct 13, 2021 by bernt-matthias Loading…
3 of 5 tasks
bump rdavidwebservice
#3912 opened Aug 28, 2021 by bernt-matthias Loading…
3 of 5 tasks
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