Community Digest

Top new questions this week:

When doing a CASSCF calculation, why do we rotate by 90 degrees rather than by a different amount?

This question pertains on how to do CASSCF calculations in ORCA: Why do we specifically rotate by 90 degrees when we swap MOs to create our orbital space? Thanks

orca casscf  
user avatar asked by jano Score of 8
user avatar answered by wzkchem5 - Zikuan Wang Score of 7

Studying weak interactions in PySCF

I am trying to reproduce an Energy Decomposition Analysis within the PySCF framework and compare the results with Orca. The problem is that while my script shows good agreement for systems such as C₂H₆...

orca pyscf  
user avatar asked by Roman A. Score of 6
user avatar answered by leeman Score of 5

Greatest hits from previous weeks:

When should spin polarized calculations be done?

Should the presence of a d block element in the unit cell mandate the need for performing spin-polarized calculations? I wanted to find out the DOS, PDOS, and the band structure. I'm new to DFT and I'...

density-functional-theory vasp quantum-espresso magnetism spin  
user avatar asked by Anoop A Nair Score of 17
user avatar answered by Thomas Score of 8

Which image format is best to use in a scientific paper?

When submitting a scientific paper written using LaTeX, to a journal, which high-quality image format do you usually use?

software-recommendations publishing  
user avatar asked by Chi Kou Score of 11
user avatar answered by Nike Dattani Score of 19

Read a data file into the atoms object in ASE

There isn't that many tutorials on Atomic Simulation Environment on the net and among those I saw, the atoms object is always built explicitly within Python. What if I have a data file containing the ...

atomic-simulation-environment software-usage  
user avatar asked by jboy Score of 8
user avatar answered by Fabian Score of 12

What makes PBE the most preferred functional over other GGA functionals?

There are many GGA functionals like PW91, PBE, and BLYP. However the most popular functional is the PBE. What is the reason PBE functional so popular?

density-functional-theory  
user avatar asked by Thomas Score of 21
user avatar answered by Fabian Score of 16

Why does Gaussian ignore the opt=maxcycles keyword for optimizations?

I have been using both Gaussian09 and Gaussian16 recently to optimize some metal complexes. The Gaussian manual (for both versions) indicates that the maximum number of steps in a geometry ...

gaussian geometry-optimization software-assistance  
user avatar asked by S R Maiti Score of 15
user avatar answered by Tyberius Score of 11

How to show electrostatic interactions in Pymol or other on the wanted residue

I have the following Pymol visual, The green molecule is receptor and red/yellow is the ligand. In the ligand I highlighted Lysine (K) residue as yellow. What I want to do is to highlight and draw ...

proteins vmd pymol  
user avatar asked by littleworth Score of 6
user avatar answered by Vandan Revanur Score of 3

Geometry optimization: what happens in the algorithm?

Geometry optimization using density functional theory (DFT) is done by moving the atoms of a molecule to get the most stable structure with the lowest possible ground state energy. My question is what ...

density-functional-theory geometry-optimization  
user avatar asked by Shalini Score of 26
user avatar answered by Nike Dattani Score of 18
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